Indulge in the delightful flavors of autumn with these pumpkin whoopie pies. These soft, spiced cookies are sandwiched together with a creamy marshmallow filling, making them the perfect treat for any fall gathering or cozy night in.
When preparing this recipe, you might need to pick up a few specific items that aren't always in your pantry. Pumpkin puree is a key ingredient that gives these whoopie pies their distinct flavor. Additionally, marshmallow fluff is essential for the filling, providing a light and fluffy texture. Ensure you have these on hand before you start baking.

Ingredients For Pumpkin Whoopie Pies
All-purpose flour: The base for the cookies, providing structure and texture.
Baking powder: Helps the cookies rise and become fluffy.
Baking soda: Works with the baking powder to leaven the cookies.
Ground cinnamon: Adds warm, spicy notes that complement the pumpkin.
Ground ginger: Provides a hint of heat and depth to the spice mix.
Ground cloves: Adds a rich, aromatic flavor to the cookies.
Salt: Enhances the overall flavor of the cookies.
Vegetable oil: Keeps the cookies moist and tender.
Brown sugar: Adds sweetness and a slight molasses flavor.
Granulated sugar: Balances the sweetness and helps with the cookie's texture.
Pumpkin puree: The star ingredient, providing moisture and a distinct pumpkin flavor.
Eggs: Bind the ingredients together and add richness.
Vanilla extract: Enhances the flavor of both the cookies and the filling.
Unsalted butter: Adds creaminess and richness to the filling.
Powdered sugar: Sweetens and thickens the filling.
Marshmallow fluff: Gives the filling its light, fluffy texture.
Technique Tip for Making Pumpkin Whoopie Pies
When mixing the dry ingredients with the wet ingredients, be careful not to overmix. Overmixing can lead to a denser texture in your pumpkin whoopie pies. Instead, mix until just combined to ensure a light and fluffy result.
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Alternative Ingredients
all-purpose flour - Substitute with whole wheat flour: Whole wheat flour adds more fiber and nutrients, though it may make the texture denser.
baking powder - Substitute with baking soda and cream of tartar: Use ¼ teaspoon baking soda and ½ teaspoon cream of tartar to replace 1 teaspoon baking powder.
baking soda - Substitute with baking powder: Use 3 teaspoon baking powder for every 1 teaspoon baking soda, but reduce the salt in the recipe.
ground cinnamon - Substitute with pumpkin pie spice: Pumpkin pie spice contains cinnamon along with other spices, enhancing the flavor profile.
ground ginger - Substitute with fresh ginger: Use 1 tablespoon of freshly grated ginger for every ½ teaspoon of ground ginger for a more vibrant flavor.
ground cloves - Substitute with allspice: Allspice has a similar warm, spicy flavor and can be used in equal amounts.
salt - Substitute with kosher salt: Use 1 ¼ teaspoon kosher salt for every 1 teaspoon table salt for a more subtle flavor.
vegetable oil - Substitute with applesauce: Applesauce can be used in equal amounts to reduce fat and add moisture.
brown sugar - Substitute with coconut sugar: Coconut sugar has a lower glycemic index and adds a slight caramel flavor.
granulated sugar - Substitute with honey: Use ¾ cup honey for every 1 cup of sugar and reduce other liquids by ¼ cup.
pumpkin puree - Substitute with sweet potato puree: Sweet potato puree has a similar texture and sweetness.
eggs - Substitute with flax eggs: Mix 1 tablespoon ground flaxseed with 3 tablespoon water per egg for a vegan alternative.
vanilla extract - Substitute with almond extract: Almond extract provides a different but complementary flavor; use half the amount.
unsalted butter - Substitute with coconut oil: Coconut oil can be used in equal amounts and adds a subtle coconut flavor.
powdered sugar - Substitute with coconut flour: Blend coconut flour with a bit of cornstarch to achieve a similar texture.
marshmallow fluff - Substitute with cream cheese: Cream cheese provides a tangy flavor and creamy texture, though it is less sweet.
Alternative Recipes Similar to Pumpkin Whoopie Pies
How to Store or Freeze Your Whoopie Pies
- To keep your Pumpkin Whoopie Pies fresh, store them in an airtight container at room temperature. They will stay delicious for up to 3 days.
- If you prefer to refrigerate them, place the whoopie pies in a single layer in an airtight container. This will extend their freshness to about a week. Before serving, let them sit at room temperature for about 15 minutes to soften.
- For longer storage, you can freeze the whoopie pies. Individually wrap each pie in plastic wrap to prevent freezer burn. Then, place the wrapped pies in a freezer-safe bag or container. They can be frozen for up to 2 months.
- When you're ready to enjoy a frozen whoopie pie, remove it from the freezer and let it thaw at room temperature for about 30 minutes. Alternatively, you can thaw them in the refrigerator overnight.
- If you want to freeze the whoopie pies before assembling, freeze the cookies and filling separately. Wrap the cookies in plastic wrap and store them in a freezer-safe bag. Place the filling in an airtight container. When ready to serve, thaw both components and assemble as directed.
How to Reheat Leftovers
Preheat your oven to 300°F (150°C). Place the pumpkin whoopie pies on a baking sheet lined with parchment paper. Warm them for about 5-7 minutes, just until the filling starts to soften slightly. This method ensures the cookies remain soft and the marshmallow fluff filling stays gooey.
For a quicker option, use the microwave. Place a pumpkin whoopie pie on a microwave-safe plate and cover it with a damp paper towel. Heat on medium power for 10-15 seconds. Be cautious not to overheat, as the filling can become too melty.
If you have an air fryer, set it to 300°F (150°C). Place the pumpkin whoopie pies in the basket, ensuring they are not touching. Heat for 3-4 minutes, checking halfway through to ensure they are warming evenly.
For a stovetop method, use a double boiler. Place the pumpkin whoopie pies on a heatproof plate and set it over a pot of simmering water. Cover with a lid and steam for 3-5 minutes. This gentle method keeps the cookies moist and the filling perfectly soft.
Essential Tools for Making Whoopie Pies
Oven: Used to bake the cookies at the specified temperature until they are set.
Parchment paper: Lined on baking sheets to prevent the cookies from sticking and to ensure even baking.
Baking sheets: Flat trays used to hold the cookie batter while baking.
Large bowl: Used to whisk together the dry ingredients.
Another bowl: Used to mix the wet ingredients separately before combining with the dry ingredients.
Whisk: Used to mix the dry ingredients thoroughly.
Mixer: Can be a hand mixer or stand mixer, used to combine the wet ingredients and later to beat the filling.
Spoon: Used to drop spoonfuls of batter onto the baking sheets.
Cooling rack: Used to cool the cookies after they come out of the oven.
Spatula: Used to transfer the cookies from the baking sheets to the cooling rack.
Piping bag: Optional, used to pipe the filling onto the cookies for a neat presentation.
Measuring cups: Used to measure out the flour, pumpkin puree, and other ingredients accurately.
Measuring spoons: Used to measure out smaller quantities of ingredients like baking powder, baking soda, and spices.
Beater: Used to beat the softened butter and powdered sugar for the filling until smooth.
Knife: Used to spread the filling onto the cookies if not using a piping bag.
How to Save Time on Making Pumpkin Whoopie Pies
Prepare the filling: Make the filling while the cookies are baking to save time.
Use a cookie scoop: A cookie scoop ensures uniform cookie sizes and speeds up the baking process.
Pre-measure ingredients: Measure all ingredients before starting to streamline the cooking process.
Cool quickly: Place cookies on a wire rack to cool faster, so you can assemble the whoopie pies sooner.
Use parchment paper: Line baking sheets with parchment paper for easy cleanup and quick cookie removal.

Pumpkin Whoopie Pies Recipe
Ingredients
Whoopie Pies
- 2 cups all-purpose flour
- 1 teaspoon baking powder
- 1 teaspoon baking soda
- 1 tablespoon ground cinnamon
- ½ teaspoon ground ginger
- ½ teaspoon ground cloves
- ½ teaspoon salt
- ½ cup vegetable oil
- 1 cup brown sugar
- ½ cup granulated sugar
- 1 cup pumpkin puree
- 2 large eggs
- 1 teaspoon vanilla extract
Cream Filling
- ½ cup unsalted butter, softened
- 1 ½ cups powdered sugar
- 1 teaspoon vanilla extract
- 1 cup marshmallow fluff
Instructions
- Preheat your oven to 350°F (175°C). Line baking sheets with parchment paper.
- In a large bowl, whisk together the flour, baking powder, baking soda, cinnamon, ginger, cloves, and salt.
- In another bowl, mix the vegetable oil, brown sugar, and granulated sugar until combined. Add the pumpkin puree, eggs, and vanilla extract. Mix well.
- Gradually add the dry ingredients to the wet ingredients, mixing until just combined.
- Drop spoonfuls of batter onto the prepared baking sheets, spacing them about 2 inches apart. Bake for 10-12 minutes or until the cookies are set. Let them cool on the baking sheets for a few minutes before transferring to a cooling rack.
- For the filling, beat the softened butter until creamy. Gradually add the powdered sugar and beat until smooth. Add the vanilla extract and marshmallow fluff, and mix until well combined.
- Once the cookies are completely cool, spread or pipe the filling onto the flat side of one cookie and top with another cookie to make a sandwich.
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